PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_46407.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 226aa    MW: 24043.4 Da    PI: 7.3507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_46407.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.4e-125597754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  MLOC_46407.3 55 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 97
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8664897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1751113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-95497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-1455102No hitNo description
Gene3DG3DSA:4.10.280.103.2E-1655111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.34E-7172213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGWDDEDELD QQSMDASSLG VSASLENAAV GAPGGGGGGG NGKGKKKGMP AKNLMAERRR  60
RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR ISDLHSELES APSSAALGGP  120
STANTFLPST PTLQPFPGRI KEERCPPAPF PSPSGQQATV EVRMREGQAV NIHMFCARRP  180
GILLSTMRAL DSLGLDIEQA VISCFDGFAM DVFRAEGGPW AAAGGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14462KKKGMPAKNLMAERRRRKK
25663ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3551180.0AK355118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016C20.
GenBankDQ1515360.0DQ151536.1 Hordeum vulgare subsp. vulgare inducer of CBF expression 2 (ICE2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131774.21e-106uncharacterized protein LOC100193144
SwissprotQ9LSE25e-86ICE1_ARATH; Transcription factor ICE1
TrEMBLM0WAF71e-165M0WAF7_HORVD; Uncharacterized protein
STRINGMLOC_46407.11e-156(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-81bHLH family protein